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Joshua Tree Genome Project PIs offer field research experience this spring

Chris Smith explains the survey protocol to volunteer leaders. (Photo by Jeremy Yoder.)
Chris Smith explains the survey protocol to volunteer leaders. (Photo by Jeremy Yoder.)

The Departments of Biology at Willamette University and California State University Northridge are pleased to announce a unique field course opportunity for undergraduates in the biological sciences and allied fields: Field Research in Desert Evolutionary Ecology. Professors Christopher (Chris) Smith (WU) and Jeremy Yoder (CSUN) will lead a two week class from Monday, May 22 to Friday, June 2, focused on the population ecology of the Joshua tree, an archetypical species of the Mojave Desert that is threatened with extinction due to climate change. Working from the Zzyzx Desert Studies Center in Baker, California, students will participate in primary research on the population ecology of Joshua trees, will learn surveying and data analysis techniques, and will complete focused research projects culminating in a research symposium. Click through for more details, and a formal course description.

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Return to Tikaboo Valley

Sunset over the contact zone (Jeremy Yoder)

We had a whole aisle to ourselves at the Henderson, Nevada, Super Wal-Mart. The shopping list for a month of desert fieldwork with a team of up to twenty filled half a dozen shopping carts — apples and oranges by the five-pound bag, piles of potatoes and pasta and oatmeal, twenty-five dozen eggs, three different kinds of Oreos, dishes and five-gallon water jugs and an extra folding table. We stacked it all in a rental RV, and the next morning we drove north.

For years, JTGP collaborator Chris Smith has organized trips to Tikaboo Valley, a site at the northernmost end of the Mojave Desert where the two species of Joshua tree meet. Over the course of each flowering season, Chris leads a team of Willamette University students, field staff, out-of-town collaborators, and willing volunteers in an ongoing experiment to understand how the trees match two different, highly specialized, pollinator species. Tikaboo provides a natural “common garden” where it’s possible to swap the pollinator species between the two Joshua trees, to see how things work out for all of them.

I drove up from Los Angeles to join Chris and his advance team in setting up camp in advance of the arrival of more than a dozen Willamette students for this week’s spring break. I was sorry to head back before things got properly underway, but I had a couple days to spend with the team scouting for flowering trees — a fine tour of Tikaboo Valley at the very beginning of spring.

Click on the gallery below to scroll through some images of the trip!

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Ewww-eww! That Smell! Why do Joshua Trees Smell Like that?

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If you’ve ever sat under a flowering Joshua tree on a spring afternoon, you’ve probably noticed a peculiar odor. “What … is … that?”

A little investigation reveals that the odor is coming from the flowers. The smell isn’t bad, exactly. Just odd. And strangely familiar. What does it remind you of? Wild mushrooms? Blue cheese? Windex? Overripe cantaloupe?

Figure 1: The source of the odor: A Joshua tree flower. (William Godsoe)

Figure 1: The source of the odor: A Joshua tree flower. (William Godsoe)

The early American botanist William Trelease described the scent of Joshua Tree Flowers as, “Oppressive” and “intolerable in a room”, but also commented a more positive note that previous descriptions of the odor as “fetid” was “not strictly accurate.”

A paper just published in the American Journal of Botany uses cutting-edge chemistry to unravel the mystery of why Joshua tree flowers smell the way they do. Glenn Svensson, a chemical ecologist at The University of Lund in Sweden, led an international team of scientists, including members Joshua Tree Genome Project, in collecting samples of Joshua tree scent. Using a hacked aquarium pump the team sucked up samples of air around Joshua tree flowers, and collected the odor molecules using some custom-made filters containing a special absorbent.

Figure 2: Sampling scent from a Joshua tree in the Spring Mountains, Nevada. The black pump is connected to hoses that draw air through carbon filters. One filter is placed inside a plastic oven bag containing a Joshua tree inflorescence. The second filter draws in air from the outside, providing an environmental control. (Chris Smith)

Figure 2: Sampling scent from a Joshua tree in the Spring Mountains, Nevada. The black pump is connected to hoses that draw air through carbon filters. One filter is placed inside a plastic oven bag containing a Joshua tree inflorescence. The second filter draws in air from the outside, providing an environmental control. (Chris Smith)

The filters were then taken back to the lab, and analyzed using process called Gas Chromatography Mass Spectroscopy (or GCMS). Gas Chromatography separates the different odor molecules in a long heated column, so that different compounds are retained the column for different lengths of time. Mass spectroscopy ionizes each molecule and produces a “fingerprint” or “mass spectrum” based on its mass and charge. The combination of retention time and mass spectrum data can be used to identify the different molecules contained in the odor mixture.

When Svennson and his team looked at the data from the Joshua trees, they found that up to 80% of the molecules found in Joshua tree’s scent was a complex 8-carbon compound called mushroom alcohol. The technical, less beautiful, name is (R)-1-Octen-3-ol, or pentyl vinyl carbinol.

Figure 3: The chemical structure of Mushroom Alcohol ((R)-1-Octen-3-ol), the primary compound found in Joshua tree scent. (Wikimedia Commons: Ju

Figure 3: The chemical structure of Mushroom Alcohol ((R)-1-Octen-3-ol), the primary compound found in Joshua tree scent. (Wikimedia Commons: Ju)

Mushroom alcohol occurs naturally in many plants and mushrooms, as well as in many foods, including artichokes, wheat bread, and soybeans. At least one other flower is known to emit odors containing mushroom alcohol: the orchid Dracula lefleurii, which mimics mushrooms to attract fly pollinators. Mushroom alcohol is also used commercially as an artificial flavor. The chemical manufacturer Sigma Aldrich describes the flavor as “cheesy, creamy, fishy, green, meaty, mushroomy, earthy, and herbaceous”

So why would a Joshua tree want to smell like a mushroom? The most likely explanation is that odor attracts the yucca moths that pollinate Joshua trees. Many flowers use odor as a way to attract pollinators, and it seems likely that the peculiar odor of the Joshua tree is somehow related to their peculiar pollination biology.

Svensson and his team compared the odor profiles of different species of Joshua trees that are pollinated by different species of moths, and found that they are indeed significantly different from one another. Joshua trees from the eastern Mojave produce less mushroom alcohol and more of another chemical, poetically called (E)-4,8-dimethyl-1,3,7-nonatriene, which is also found in cardamom.

The differences in scent does suggest that odor is important for attracting pollinators but, counter-intuitively, the two different species of yucca moth that pollinate Joshua trees seem to be unable to tell the difference between the different trees; where the two Joshua tree species grow together, the moths get confused and visit both trees equally. Why the flowers differ in their scent, even though the moths can’t seem to tell the difference, remains an evolutionary mystery for the moment.

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What is the deal with Joshua trees and yucca moths?

Chris Smith examines a cluster of Joshua tree flowers. (Photo: Jeremy Yoder)

Chris Smith examines a cluster of Joshua tree flowers. (Photo: Jeremy Yoder)

One of the strangest things of all about Joshua trees may be the way that they are pollinated.

Many plants attract pollinators with rewards, like sugary nectar, or excess pollen that animal pollinators can eat. A wide variety of insects, birds, and even mammals visit flowers in pursuit of such rewards, incidentally carrying pollen from flower to flower in the process.

Joshua trees, like all yuccas, rely on a different strategy for pollination. Joshua trees produce no nectar and comparatively little pollen. And, instead of attracting a variety of different pollinators, yuccas rely exclusively on a few species of drab moths to assist them with reproduction.

A female yucca moth in the process of laying eggs in a Joshua tree flower. (Photo: Chris Smith)

A female yucca moth in the process of laying eggs in a Joshua tree flower. (Photo: Chris Smith)

These insects, known as yucca moths, are grey, white, or sometimes black, are between one-quarter inch to an inch in size, and at first glance seem entirely unremarkable. However, they have one feature that no other species of moths possess. Surrounding the female yucca moth’s moth is a pair of ‘tentacles’ – long, flexible, coiled appendages. The moths use these tentacle to collect balls of pollen from yucca flowers. The moths then fly to another flower, where they use their tentacles to deposit the pollen onto the floral stigma – the receptive surface where the pollen needs to land in order to fertilize the flower.

Different species of yucca moth use different strategies to get the pollen into the right place. Some moths use a bobbing, pecking behavior, like a child’s drinking bird toy, pushing their tentacles into the stigma to pack the pollen into place. Other species unfurl their tentacle while holding a small batch of pollen and then use their legs and feet to stuff the pollen into the stigma. You can see this in the video below, which shows a female yucca moth inside a cut-open flower, pushing pollen toward the stigma.

Watching the moths’ behavior, it’s hard not to come to the conclusion that the moths are pollinating the plants intentionally. Although it is reasonable to wonder whether moths – not known for their smarts – do anything intentionally, it sure looks like they are trying to pollinate the flowers.

Why would a moth go to so much effort just to pollinate a yucca?

The answer is that the moths are getting something out of the deal. Shortly before they pollinate a flower, the female moths use a needle-like organ called an ‘ovipositor’ to inject their eggs into the developing flower. As the flower matures, it will develop into a fruit and produce seeds. Inside the fruit, the moth’s eggs will hatch into caterpillars that will eat some (but usually not all) of the developing seeds. So, by pollinating the flower, the moth ensures that there will be a nutritious food source for her offspring. And because yucca moths are very reliable pollinators, the trees don’t need to offer ‘bribes’ in the form of nectar, and can get away with producing very little pollen since almost none of it will be wasted.

Things aren’t as simple as they seem.

Although on the surface the relationship between the Joshua tree and yucca moths seems to be very harmonious, a closer look suggests that that it is an uneasy alliance. On multiple occasions yucca moths have developed strategies to ‘cheat’ the system – moths that wait until the yucca has been pollinated by a different species of moth, and then come lay their eggs afterwards without having to do the hard work of pollination themselves. Likewise, there is some evidence that the plants will abort flowers that have too many yucca moth caterpillars (this kills both the caterpillars and the developing seeds, but spares the plant the cost of developing a fruit that will produce few or no viable seeds). Finally, there is some evidence that some species of yucca have evolved changes in the shape of the flower to prevent the moths from laying eggs on the developing seeds.

So what about Joshua trees in particular?

The story of yucca moth pollination in Joshua trees has gotten even more interesting recently. A careful study of the moths that pollinate the Joshua tree revealed that the trees are actually pollinated by two similar, but distinct species. One of the two moths is bigger, and is lighter grey in color. The bigger moth also has a longer ovipositor.

This discovery prompted a closer study of Joshua trees, which showed that trees associated with each of the two different species of moth are actually slightly different from one another. Joshua trees growing in the western Mojave desert, which are pollinated by the larger of the two moth species, tend to be taller and more ‘tree-like’ with a longer trunk. They also have longer leaves. On the other hand, Joshua trees occurring in the eastern Mojave, which are pollinated by the smaller moth, tend be shorter and ‘bush-like’ with lots of branches and shorter leaves. Based on these differences, some botanists have argued that there may actually be two species of Joshua tree: Yucca brevifolia, occurring in the western Mojave and Yucca jaegeriana, occurring in the eastern Mojave. (Preliminary work on the Joshua tree genome suggests that the two tree types are indeed genetically different from one another, but still similar enough that genome sequence data from one species will provide a good starting place for studying the other.)

Examples of Yucca brevifolia and Yucca jaegeriana growing side by side. (Photo: Jeremy Yoder)

Examples of Yucca brevifolia and Yucca jaegeriana growing side by side. (Photo: Jeremy Yoder)

Most interestingly of all, the biggest difference between the trees pollinated by each species of moth is in their flowers, and the biggest difference in flowers is the part of the flower where the moths lay their eggs – the style. Trees pollinated by the larger moth have a longer style, and trees pollinated by the smaller moth have a shorter style. What’s more, if moths accidentally visit the wrong type of tree (which they do sometimes in places where the two trees grow together), the moths are less successful in laying eggs.

All of this leads us to think that the two types of Joshua tree have adapted to the different species of moths. Evolutionary changes in the flowers may have occurred as a way to reduce the number of seeds that get eaten by the moths’ caterpillars. The moths, in turn, may have evolved differences in body size as a way to compensate for the changes in the flowers. This process – changes in one of the organisms causing changes in the other, and vice-versa– is known as ‘coevolution’. Understanding how the genetics of the Joshua tree might have enabled coevolution is one of the questions we hope to answer with a genome sequence.

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